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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52264.1Twin-arginine translocation pathway signal sequence domain protein, putative. (186 aa)    
Predicted Functional Partners:
EAR50941.1
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
    0.877
EAR50810.1
Hypothetical protein.
   
    0.767
EAR49442.1
COG3524 Capsule polysaccharide export protein.
   
    0.733
EAR49577.1
Hypothetical protein.
   
    0.715
EAR52265.1
COG0113 Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.701
EAR49604.1
Hypothetical protein.
  
     0.690
EAR52266.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.659
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.618
EAR51929.1
COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.
   
    0.618
EAR52006.1
Capsular polysaccharide export inner-membrane protein,BexC/CtrB/KpsE family protein; COG3524 Capsule polysaccharide export protein.
   
    0.601
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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