Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR49404.1Hypothetical protein; COG0419 ATPase involved in DNA repair. (160 aa)    
Predicted Functional Partners:
EAR49403.1
COG3027 Uncharacterized protein conserved in bacteria.
 
  
 0.905
EAR52921.1
Lipolytic enzyme, G-D-S-L; COG2755 Lysophospholipase L1 and related esterases.
   
 0.784
EAR49576.1
Lipolytic enzyme, G-D-S-L family protein; COG2755 Lysophospholipase L1 and related esterases.
   
 0.784
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.771
EAR49446.1
PaxA, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
 0.763
EAR52548.1
Hypothetical protein.
  
 0.675
EAR50015.1
Peptidoglycan binding domain protein; COG2951 Membrane-bound lytic murein transglycosylase B.
  
   
 0.641
EAR52273.1
Hypothetical protein.
  
     0.636
EAR53019.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
     0.635
EAR52484.1
Lipoprotein, putative.
  
     0.612
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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