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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (739 aa)    
Predicted Functional Partners:
leuS
COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 
 0.953
EAR50949.1
Haem peroxidase; COG1200 RecG-like helicase.
 
  
 0.935
EAR51986.1
COG0514 Superfamily II DNA helicase.
  
 
 0.895
EAR51987.1
COG0210 Superfamily I DNA and RNA helicases.
  
 
 0.895
EAR51988.1
COG0210 Superfamily I DNA and RNA helicases.
  
 
 0.895
EAR50308.1
Helicase IV; COG0210 Superfamily I DNA and RNA helicases.
  
 
 0.888
EAR50862.1
Putative uvrD/DNA Helicase II; COG0210 Superfamily I DNA and RNA helicases.
 
  
 0.864
EAR51200.1
DNA ligase; COG1793 ATP-dependent DNA ligase.
     
 0.862
EAR50857.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
     
 0.835
EAR51244.1
Hypothetical protein; COG1793 ATP-dependent DNA ligase.
     
 0.835
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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