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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49680.1Phosphinothricin N-acetyltransferase, putative; COG1247 Sortase and related acyltransferases. (156 aa)    
Predicted Functional Partners:
EAR49681.1
Hypothetical protein.
       0.855
EAR49679.1
Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1.
       0.793
EAR49677.1
Hypothetical protein.
 
     0.782
EAR49678.1
Possible Endonuclease/Exonuclease/phosphatase fa.
       0.763
ureA
Urease, gamma subunit; COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
  
    0.761
EAR49682.1
COG0303 Molybdopterin biosynthesis enzyme.
       0.746
EAR49683.1
XdhC/CoxI family protein; COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
       0.746
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
    0.665
murJ
Putative virulence factor, MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
   
    0.505
EAR51789.1
Hypothetical protein; COG0160 4-aminobutyrate aminotransferase and related aminotransferases.
 
  
 0.468
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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