Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR51658.1Iron-sulfur cluster assembly transcription factor IscR, putative; COG1959 Predicted transcriptional regulator. (143 aa)    
Predicted Functional Partners:
EAR51657.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
 
 0.990
EAR49780.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
  
 0.939
EAR51691.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
  
 0.877
EAR51656.1
FeS assembly protein SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
     
 0.739
EAR51652.1
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
     
 0.691
EAR51653.1
Suf C, ATPase; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
     
 0.691
EAR49679.1
Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1.
  
  
 0.643
EAR51659.1
Hypothetical protein; COG2945 Predicted hydrolase of the alpha/beta superfamily.
       0.628
EAR50149.1
Iron-sulfur cluster-binding protein; COG0633 Ferredoxin.
  
  
 0.619
EAR52225.1
COG1536 Flagellar motor switch protein.
    
   0.608
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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