Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR51050.1GntR family regulatory protein; COG2188 Transcriptional regulators. (241 aa)    
Predicted Functional Partners:
EAR51049.1
COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain.
 
     0.888
EAR51048.1
COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
       0.773
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.725
EAR52717.1
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
    0.661
EAR52355.1
Transcriptional regulator, GntR family protein; COG2188 Transcriptional regulators.
  
     0.655
EAR51056.1
COG2971 Predicted N-acetylglucosamine kinase.
 
     0.654
EAR50251.1
Hypothetical protein; COG2186 Transcriptional regulators.
  
    0.653
EAR51051.1
Sugar ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
 
   0.606
EAR51371.1
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
    0.605
EAR51053.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.590
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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