STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51070.1COG1045 Serine acetyltransferase. (272 aa)    
Predicted Functional Partners:
EAR51069.1
COG0031 Cysteine synthase.
 
 0.997
EAR51342.1
COG0031 Cysteine synthase.
 
 0.992
EAR51954.1
COG0031 Cysteine synthase.
 
 0.991
cysS
COG0215 Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.990
EAR50518.1
COG0560 Phosphoserine phosphatase.
    
 0.937
nadA
Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
  
    0.886
EAR52956.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.869
EAR49648.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.869
trpA
COG0159 Tryptophan synthase alpha chain; Belongs to the TrpA family.
     
 0.857
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.854
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.