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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50547.1COG1664 Integral membrane protein CcmA involved in cell shape determination. (163 aa)    
Predicted Functional Partners:
EAR50546.1
Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.938
EAR50548.1
Transmembrane efflux protein; COG0477 Permeases of the major facilitator superfamily.
       0.775
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.696
EAR50545.1
AhpC/TSA family protein; COG1225 Peroxiredoxin.
     
 0.657
EAR51740.1
COG1886 Flagellar motor switch/type III secretory pathway protein.
    
   0.591
EAR50719.1
Hypothetical protein; COG1886 Flagellar motor switch/type III secretory pathway protein.
    
   0.591
EAR49604.1
Hypothetical protein.
  
     0.572
EAR51723.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.535
EAR52014.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
 
     0.528
EAR51504.1
Hypothetical protein.
  
     0.524
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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