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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49777.1LysM domain/M23/M37 peptidase; COG0739 Membrane proteins related to metalloendopeptidases. (402 aa)    
Predicted Functional Partners:
surE
Survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.829
EAR50546.1
Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases.
 
   
 0.779
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
     
 0.767
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.608
EAR50395.1
Penicillin-binding protein 1A; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.590
EAR49778.1
Thiamine-phosphate pyrophosphorylase, putative; COG0352 Thiamine monophosphate synthase.
       0.572
EAR49604.1
Hypothetical protein.
  
     0.510
EAR49393.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
 
   
 0.500
EAR52013.1
Membrane protein, putative; COG2891 Cell shape-determining protein.
  
     0.491
EAR49673.1
Glycosyl transferase, family 51; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.489
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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