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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases. (478 aa)    
Predicted Functional Partners:
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.994
EAR50190.1
ABC sugar (xylose) transporter, inner membrane subunit; COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.843
EAR50189.1
Xylose ABC transporter, ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
    0.809
EAR52438.1
COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.779
rhaM
Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.744
EAR51861.1
Hypothetical protein.
  
  
 0.744
EAR52610.1
Hypothetical protein; COG3822 ABC-type sugar transport system, auxiliary component.
    
  0.686
EAR50599.1
COG4952 Predicted sugar isomerase.
    
  0.686
EAR50191.1
COG4213 ABC-type xylose transport system, periplasmic component.
 
     0.671
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.643
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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