close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50189.1Xylose ABC transporter, ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component. (254 aa)    
Predicted Functional Partners:
EAR50190.1
ABC sugar (xylose) transporter, inner membrane subunit; COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
EAR50191.1
COG4213 ABC-type xylose transport system, periplasmic component.
 
  0.965
EAR51122.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
  0.924
EAR52092.1
ABC transporter permease protein; COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
   
  0.893
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.859
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
    0.809
EAR51346.1
FG-GAP repeat domain protein.
 
     0.771
EAR52569.1
ABC sugar transporter, inner membrane subunit; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  0.768
EAR50192.1
Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase.
     0.767
EAR50171.1
COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
  0.743
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.