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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50190.1ABC sugar (xylose) transporter, inner membrane subunit; COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (430 aa)    
Predicted Functional Partners:
EAR50189.1
Xylose ABC transporter, ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
 0.999
EAR50191.1
COG4213 ABC-type xylose transport system, periplasmic component.
 
 0.984
EAR51122.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
 
 0.963
EAR51807.1
ABC-transport system ATP binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
 0.938
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
    0.898
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
    0.843
EAR51346.1
FG-GAP repeat domain protein.
 
     0.807
EAR51805.1
Ribose ABC transporter, periplasmic binding protein; COG1879 ABC-type sugar transport system, periplasmic component.
  
  0.798
EAR51825.1
Sugar ABC transporter ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.792
EAR50192.1
Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase.
 
     0.771
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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