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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50213.1COG3713 Outer membrane protein V. (257 aa)    
Predicted Functional Partners:
EAR50215.1
COG4103 Uncharacterized protein conserved in bacteria.
       0.608
EAR50211.1
Hypothetical protein.
 
     0.551
rlmJ
Hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.545
EAR50216.1
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
       0.545
EAR50210.1
COG0591 Na+/proline symporter.
       0.455
EAR50212.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.455
EAR52801.1
D-fructose-6-phosphate amidotransferase.
  
     0.415
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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