STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52545.1Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (247 aa)    
Predicted Functional Partners:
EAR52866.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
     
 0.840
EAR52548.1
Hypothetical protein.
 
     0.811
EAR52544.1
2-dehydro-3-deoxygluconokinase; COG0524 Sugar kinases, ribokinase family.
  0.804
EAR52547.1
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.781
EAR52546.1
Putative tartronate semialdehyde reductase (TSAR); COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases.
 
     0.737
EAR52549.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.731
EAR52554.1
Putative adhesin; COG0534 Na+-driven multidrug efflux pump.
 
    0.657
EAR52553.1
COG1802 Transcriptional regulators.
 
     0.654
EAR52543.1
Hypothetical protein; COG0684 Demethylmenaquinone methyltransferase.
    
  0.648
EAR52550.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.635
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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