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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52551.1Hypothetical protein; COG4209 ABC-type polysaccharide transport system, permease component. (331 aa)    
Predicted Functional Partners:
EAR52550.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
  0.996
EAR52549.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
 
  0.992
EAR52552.1
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
  
  0.887
EAR52548.1
Hypothetical protein.
 
     0.884
EAR51786.1
Putative sugar uptake ABC transporter permease protein; COG0395 ABC-type sugar transport system, permease component.
 
  0.855
EAR52554.1
Putative adhesin; COG0534 Na+-driven multidrug efflux pump.
 
     0.843
EAR51868.1
COG0395 ABC-type sugar transport system, permease component.
 
  0.814
EAR51903.1
COG0395 ABC-type sugar transport system, permease component.
 
  0.800
EAR51142.1
COG0395 ABC-type sugar transport system, permease component.
 
  0.775
EAR51956.1
COG0395 ABC-type sugar transport system, permease component.
 
  0.769
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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