STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52567.1Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (336 aa)    
Predicted Functional Partners:
EAR52566.1
Hypothetical protein.
 
     0.888
EAR52563.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.846
EAR52564.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
     0.845
EAR52866.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
  0.776
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.714
EAR52667.1
COG4805 Uncharacterized protein conserved in bacteria.
  
     0.523
EAR50848.1
PAS; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 
 0.507
EAR51814.1
Levansucrase; COG1621 Beta-fructosidases (levanase/invertase).
  
     0.465
EAR51755.1
COG4786 Flagellar basal body rod protein.
    
   0.459
EAR50736.1
COG4786 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.459
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.