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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52578.1Putative glycosly transferase; COG0463 Glycosyltransferases involved in cell wall biogenesis. (310 aa)    
Predicted Functional Partners:
EAR52579.1
exoQ-like protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
  
 0.816
EAR50273.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.773
EAR52580.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
  0.633
EAR50121.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.629
EAR52576.1
Hypothetical protein.
       0.588
EAR52577.1
Hypothetical protein.
       0.588
EAR52581.1
Hypothetical protein.
       0.510
EAR50120.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.508
EAR52123.1
Hypothetical protein; COG0578 Glycerol-3-phosphate dehydrogenase.
 
     0.492
EAR52956.1
COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.452
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.