STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52579.1exoQ-like protein; COG3307 Lipid A core - O-antigen ligase and related enzymes. (413 aa)    
Predicted Functional Partners:
EAR52580.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.903
EAR49452.1
Nucleotide sugar epimerase/dehydratase; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.846
EAR52578.1
Putative glycosly transferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.816
EAR51188.1
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.761
EAR50277.1
Mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.753
EAR52575.1
Hypothetical protein; COG1922 Teichoic acid biosynthesis proteins; Belongs to the glycosyltransferase 26 family.
 
 
 0.703
EAR49519.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.656
EAR52577.1
Hypothetical protein.
       0.635
EAR52576.1
Hypothetical protein.
       0.588
EAR50713.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.579
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.