close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52586.1COG3563 Capsule polysaccharide export protein. (673 aa)    
Predicted Functional Partners:
EAR52587.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.988
EAR52006.1
Capsular polysaccharide export inner-membrane protein,BexC/CtrB/KpsE family protein; COG3524 Capsule polysaccharide export protein.
 
  
 0.973
EAR52007.1
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.973
EAR49442.1
COG3524 Capsule polysaccharide export protein.
 
  
 0.973
EAR49443.1
Putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.970
EAR49441.1
Putative cell surface polysaccharide export ABC-2 transporter permease protein; Similar to wzm1Y20833; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.964
EAR53002.1
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.960
EAR52588.1
COG3562 Capsule polysaccharide export protein.
   
 0.957
EAR50114.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
  
 0.909
EAR51497.1
Putative ABC-transporter transmembrane component; COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.840
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.