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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52588.1COG3562 Capsule polysaccharide export protein. (434 aa)    
Predicted Functional Partners:
EAR52586.1
COG3563 Capsule polysaccharide export protein.
   
 0.957
EAR52587.1
COG1596 Periplasmic protein involved in polysaccharide export.
 
   
 0.899
EAR52006.1
Capsular polysaccharide export inner-membrane protein,BexC/CtrB/KpsE family protein; COG3524 Capsule polysaccharide export protein.
 
 
 
 0.863
EAR49442.1
COG3524 Capsule polysaccharide export protein.
 
 
 
 0.843
EAR52007.1
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
   
 0.831
EAR49443.1
Putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
   
 0.804
EAR53002.1
ABC transporter, permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
   
 0.799
EAR50646.1
Hypothetical protein.
 
     0.785
EAR52995.1
Hypothetical protein.
 
     0.774
EAR52994.1
core-2/I-branching enzyme family protein.
  
     0.766
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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