close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52610.1Hypothetical protein; COG3822 ABC-type sugar transport system, auxiliary component. (219 aa)    
Predicted Functional Partners:
tdh
L-threonine 3-dehydrogenase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
    
  0.772
EAR51159.1
Hypothetical protein; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
    
  0.772
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.686
EAR50174.1
Xylulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.686
EAR51299.1
Putative carbohydrate kinase; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.
    
  0.686
xylB-2
Xylulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.686
EAR52611.1
Hypothetical protein.
       0.554
EAR50308.1
Helicase IV; COG0210 Superfamily I DNA and RNA helicases.
  
     0.427
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.