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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50663.1COG2166 SufE protein probably involved in Fe-S center assembly. (142 aa)    
Predicted Functional Partners:
EAR51649.1
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 0.998
EAR51387.1
Hypothetical protein; COG0520 Selenocysteine lyase.
  
 0.965
EAR51656.1
FeS assembly protein SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   0.912
EAR51653.1
Suf C, ATPase; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
   0.901
EAR51652.1
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   0.891
EAR50664.1
Hypothetical protein; COG1199 Rad3-related DNA helicases.
       0.708
EAR51687.1
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
     0.485
hisS
COG0124 Histidyl-tRNA synthetase.
 
     0.408
EAR49780.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
 
   
 0.400
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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