STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50683.1COG3194 Ureidoglycolate hydrolase. (167 aa)    
Predicted Functional Partners:
EAR50684.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
 
 
  0.992
EAR50693.1
COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.
 
  
  0.971
EAR50685.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
    0.883
EAR49525.1
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
  
  
  0.879
EAR50687.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.878
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.866
ureA
Urease, gamma subunit; COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
    
  0.845
ureB
Urease, beta subunit; COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
    
  0.844
ureC
Urease, alpha subunit; COG0804 Urea amidohydrolase (urease) alpha subunit.
    
  0.844
EAR50682.1
COG2233 Xanthine/uracil permeases.
 
     0.829
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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