STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50684.1Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (470 aa)    
Predicted Functional Partners:
EAR50685.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.999
EAR50683.1
COG3194 Ureidoglycolate hydrolase.
 
 
  0.992
EAR50708.1
Amidase, hydantoinase/carbamoylase family protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
   
 0.959
EAR52966.1
Amidase, hydantoinase/carbamoylase family protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
  
 0.955
EAR50687.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.883
EAR51874.1
COG4126 Hydantoin racemase.
 
  
  0.880
EAR50682.1
COG2233 Xanthine/uracil permeases.
  
 0.841
EAR52963.1
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
    
 0.815
EAR50383.1
Dihydroorotase, multifunctional complex type; COG0044 Dihydroorotase and related cyclic amidohydrolases.
    
 0.815
EAR50443.1
COG4631 Xanthine dehydrogenase, molybdopterin-binding subunit B.
 
     0.796
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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