Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR50692.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
EAR52315.1
ATPase, putative.
 
    0.918
EAR52312.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
    0.916
EAR52310.1
COG3847 Flp pilus assembly protein, pilin Flp.
 
    0.886
EAR52318.1
Type II/IV secretion system protein, TadC subfamily protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.851
EAR52316.1
ATPase, putative; COG4963 Flp pilus assembly protein, ATPase CpaE.
 
    0.843
EAR50681.1
COG4961 Flp pilus assembly protein TadG.
 
    0.836
EAR50680.1
Hypothetical protein.
 
     0.824
EAR52322.1
Hypothetical protein.
 
  
 0.804
EAR52266.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.767
EAR50312.1
Lipoprotein, putative; COG3087 Cell division protein.
 
     0.767
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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