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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51804.1COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (302 aa)    
Predicted Functional Partners:
EAR52712.1
Putative transcriptional regulatory protein; COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain.
  
     0.775
EAR51803.1
COG3684 Tagatose-1,6-bisphosphate aldolase.
 
     0.683
EAR51801.1
Glucokinase; COG0529 Adenylylsulfate kinase and related kinases.
       0.515
EAR51802.1
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
       0.515
EAR51808.1
COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.499
EAR51800.1
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.490
EAR51807.1
ABC-transport system ATP binding protein; COG1129 ABC-type sugar transport system, ATPase component.
  
    0.455
EAR51805.1
Ribose ABC transporter, periplasmic binding protein; COG1879 ABC-type sugar transport system, periplasmic component.
  
    0.448
EAR51806.1
Ribose ABC transporter, permease protein; COG4158 Predicted ABC-type sugar transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.447
EAR51809.1
Glucose-methanol-choline oxidoreductase:FAD dependent oxidoreductase:GMC oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
       0.420
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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