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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49999.1Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (217 aa)    
Predicted Functional Partners:
EAR50259.1
COG1802 Transcriptional regulators.
  
     0.774
EAR50226.1
Hypothetical protein; COG1802 Transcriptional regulators.
  
     0.773
EAR51864.1
COG2186 Transcriptional regulators.
  
    0.771
EAR52363.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.770
EAR50924.1
COG2186 Transcriptional regulators.
  
    0.578
EAR50000.1
Pyrimidine 5'-nucleotidase; COG1011 Predicted hydrolase (HAD superfamily).
       0.547
EAR50001.1
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.457
EAR50251.1
Hypothetical protein; COG2186 Transcriptional regulators.
  
    0.437
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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