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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52301.1Hypothetical protein; COG0587 DNA polymerase III, alpha subunit. (130 aa)    
Predicted Functional Partners:
EAR52300.1
Alkane-1 monooxygenase, putative.
       0.676
EAR52273.1
Hypothetical protein.
  
     0.632
EAR51575.1
Hypothetical protein.
  
     0.600
EAR50312.1
Lipoprotein, putative; COG3087 Cell division protein.
  
     0.568
EAR51082.1
Hypothetical protein.
  
     0.567
EAR51080.1
Hypothetical protein.
  
     0.566
EAR52310.1
COG3847 Flp pilus assembly protein, pilin Flp.
  
     0.566
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.565
EAR50720.1
Putative flagellar biosynthesis/type III secretory pathway protein.
  
     0.557
EAR52302.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
       0.541
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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