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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52321.1Lipoprotein, putative; COG0457 FOG: TPR repeat. (286 aa)    
Predicted Functional Partners:
EAR52322.1
Hypothetical protein.
 
   
 0.967
EAR52320.1
TPR domain protein; COG0457 FOG: TPR repeat.
 
     0.939
EAR52318.1
Type II/IV secretion system protein, TadC subfamily protein; COG2064 Flp pilus assembly protein TadC.
 
  
 0.920
EAR52319.1
Type II/IV secretion system protein, TadC subfamily protein; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
  
 0.920
EAR50848.1
PAS; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
 
 0.906
EAR52315.1
ATPase, putative.
 
    0.877
EAR52316.1
ATPase, putative; COG4963 Flp pilus assembly protein, ATPase CpaE.
 
    0.875
EAR52313.1
Outer membrane general secretion pathway protein, Secretin; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.861
EAR52324.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
 
     0.853
EAR52312.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.837
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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