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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52363.1Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (219 aa)    
Predicted Functional Partners:
EAR49999.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.770
EAR51831.1
COG1802 Transcriptional regulators.
  
     0.754
EAR51893.1
COG1802 Transcriptional regulators.
  
     0.752
EAR50259.1
COG1802 Transcriptional regulators.
  
     0.751
EAR51039.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.750
EAR50226.1
Hypothetical protein; COG1802 Transcriptional regulators.
  
     0.736
EAR51315.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.729
EAR51799.1
COG1802 Transcriptional regulators.
  
     0.699
EAR52553.1
COG1802 Transcriptional regulators.
  
     0.680
EAR52364.1
Zinc metallopeptidase-like protein; COG1451 Predicted metal-dependent hydrolase.
       0.678
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.