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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52365.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
EAR52364.1
Zinc metallopeptidase-like protein; COG1451 Predicted metal-dependent hydrolase.
       0.706
EAR52623.1
DnaJ domain protein; COG2214 DnaJ-class molecular chaperone.
  
     0.599
EAR49983.1
Hypothetical protein.
  
    0.558
EAR50367.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
  
     0.510
EAR51441.1
Hypothetical protein.
 
     0.495
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
    0.493
EAR50689.1
COG0460 Homoserine dehydrogenase.
   
    0.483
EAR52363.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
       0.475
EAR50789.1
Hypothetical protein.
  
     0.464
EAR52418.1
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
  
     0.455
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.