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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52398.1Hypothetical protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone. (225 aa)    
Predicted Functional Partners:
tsaD
Glycoprotease (M22) metalloprotease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
 
 0.995
EAR53020.1
Hypothetical protein; COG0802 Predicted ATPase or kinase.
 
 
 0.994
EAR52399.1
Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases.
  
 
 0.908
EAR49766.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
  0.858
EAR52397.1
Nitrogen-fixing NifU; COG0694 Thioredoxin-like proteins and domains.
       0.855
EAR50418.1
COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
   
    0.734
tadA
Cytidine and deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.727
EAR49906.1
COG1573 Uracil-DNA glycosylase.
  
    0.569
EAR52400.1
COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
       0.542
EAR52008.1
uracil-DNA glycosylase, putative; COG1573 Uracil-DNA glycosylase.
  
    0.542
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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