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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52399.1Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases. (141 aa)    
Predicted Functional Partners:
EAR52398.1
Hypothetical protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
  
 
 0.908
EAR52397.1
Nitrogen-fixing NifU; COG0694 Thioredoxin-like proteins and domains.
       0.855
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.556
EAR52400.1
COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
       0.542
EAR52396.1
Hypothetical protein.
       0.524
EAR52403.1
Sugar ABC transporter, permease protein; COG4603 ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.437
EAR52355.1
Transcriptional regulator, GntR family protein; COG2188 Transcriptional regulators.
      
 0.404
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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