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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52420.1Hypothetical protein; COG5515 Uncharacterized conserved small protein. (68 aa)    
Predicted Functional Partners:
EAR52421.1
NnrU family protein; COG4094 Predicted membrane protein.
  
    0.859
EAR52422.1
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
       0.855
EAR52419.1
COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit.
       0.658
EAR52418.1
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
       0.646
EAR52423.1
Hypothetical protein.
       0.638
EAR52417.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
       0.598
EAR52414.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.499
EAR52424.1
Hypothetical protein.
 
     0.488
EAR52416.1
Hypothetical protein.
       0.469
EAR52415.1
Hypothetical protein.
       0.426
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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