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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49600.1COG3820 Uncharacterized protein conserved in bacteria. (253 aa)    
Predicted Functional Partners:
EAR50357.1
Electrotransfer ubiquinone oxidoreductase family protein; Accepts electrons from ETF and reduces ubiquinone.
   
    0.827
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.785
EAR51331.1
COG3814 Uncharacterized protein conserved in bacteria.
  
   
 0.785
atpF-2
FoF1 ATP synthase, subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.766
EAR53038.1
Transporter, Tim44 family protein; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.763
EAR50408.1
COG3750 Uncharacterized protein conserved in bacteria.
  
   
 0.738
EAR50888.1
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.737
recO-2
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.737
EAR49599.1
Ribonuclease T2 family protein; COG3719 Ribonuclease I; Belongs to the RNase T2 family.
       0.705
EAR52987.1
Exonuclease, putative; COG0349 Ribonuclease D.
  
     0.691
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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