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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50771.1Hypothetical protein; COG1299 Phosphotransferase system, fructose-specific IIC component. (74 aa)    
Predicted Functional Partners:
EAR50772.1
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.787
EAR51340.1
Tellurite resistance protein; COG0004 Ammonia permease.
  
     0.737
rpmI
COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
     
 0.713
EAR49496.1
Hypothetical protein.
  
     0.709
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
     
 0.699
EAR50486.1
Membrane protein, putative; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.686
EAR50489.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.659
EAR50148.1
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.653
EAR49427.1
Hypothetical protein.
  
     0.629
EAR50412.1
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.610
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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