STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50487.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
EAR51649.1
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.918
EAR51387.1
Hypothetical protein; COG0520 Selenocysteine lyase.
    
   0.918
EAR50486.1
Membrane protein, putative; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.855
EAR52541.1
Putative trehalose synthase; COG0366 Glycosidases.
  
 
  0.768
leuD
Isopropylmalate isomerase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.616
EAR50488.1
COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.
       0.593
EAR50719.1
Hypothetical protein; COG1886 Flagellar motor switch/type III secretory pathway protein.
   
    0.589
EAR50658.1
Membrane protein, putative.
  
  
 0.512
EAR49604.1
Hypothetical protein.
  
     0.510
EAR52537.1
COG1640 4-alpha-glucanotransferase.
    
 0.479
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.