STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50708.1Amidase, hydantoinase/carbamoylase family protein; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases. (400 aa)    
Predicted Functional Partners:
EAR50684.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
   
 0.959
EAR52963.1
Dihydropyrimidinase; COG0044 Dihydroorotase and related cyclic amidohydrolases.
 
 
 0.955
EAR52970.1
COG0167 Dihydroorotate dehydrogenase.
 
 0.874
EAR50693.1
COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.
  
 
 0.805
EAR52971.1
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 
  0.764
EAR52871.1
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
  
 
  0.721
EAR51781.1
FAD linked oxidase-like; COG0277 FAD/FMN-containing dehydrogenases.
   
  0.614
EAR50256.1
Diaminopropionate ammonia-lyase; COG1171 Threonine dehydratase.
 
    0.609
EAR50709.1
Hypothetical protein.
       0.543
pheT
phenylalanyl-tRNA synthetase beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.543
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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