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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50715.1ABC transporter, periplasmic binding protein; COG4134 ABC-type uncharacterized transport system, periplasmic component. (397 aa)    
Predicted Functional Partners:
EAR50716.1
ABC transporter, fused inner membrane subunits; COG4135 ABC-type uncharacterized transport system, permease component.
 
 
 0.979
EAR50717.1
COG4136 ABC-type uncharacterized transport system, ATPase component.
 
   
 0.971
EAR50714.1
COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.960
EAR52450.1
Hypothetical transmemebrane protein.
 
  
 0.529
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
    0.491
EAR50711.1
Hypothetical protein.
       0.446
EAR50712.1
Hypothetical protein.
       0.446
EAR50713.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
       0.446
tig
Trigger factor.
 
  
 0.439
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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