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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52874.1COG3533 Uncharacterized protein conserved in bacteria. (633 aa)    
Predicted Functional Partners:
EAR53148.1
COG3534 Alpha-L-arabinofuranosidase.
 
     0.790
EAR51062.1
Hypothetical protein; COG3534 Alpha-L-arabinofuranosidase.
 
     0.786
EAR51959.1
Rhamnosidase A.
  
     0.750
EAR52877.1
Putative sugar uptake ABC transporter permease protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.736
EAR52875.1
Putative sugar uptake ABC transporter ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
       0.697
EAR52876.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
       0.697
EAR51870.1
COG3250 Beta-galactosidase/beta-glucuronidase.
 
     0.664
EAR53147.1
Hypothetical protein; COG4189 Predicted transcriptional regulator.
 
     0.637
EAR52878.1
Putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.619
EAR52880.1
Putative exported oxidoreductase protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.578
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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