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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52919.1Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease. (212 aa)    
Predicted Functional Partners:
EAR52918.1
Hypothetical protein; Belongs to the UPF0434 family.
       0.855
EAR52920.1
COG3118 Thioredoxin domain-containing protein.
 
   
 0.846
EAR50933.1
Molybdopterin biosynthesis protein MoeB, putative; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
    
 0.808
EAR51201.1
Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
     
 0.739
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.596
EAR52921.1
Lipolytic enzyme, G-D-S-L; COG2755 Lysophospholipase L1 and related esterases.
       0.452
EAR52384.1
Hypothetical protein.
      
 0.422
EAR52866.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
       0.412
EAR50545.1
AhpC/TSA family protein; COG1225 Peroxiredoxin.
      
 0.404
EAR49976.1
Exodeoxyribonuclease III, putative; COG0708 Exonuclease III.
       0.400
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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