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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52940.1COG0093 Ribosomal protein L14. (278 aa)    
Predicted Functional Partners:
mepA
Penicillin-insensitive murein endopeptidase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.817
EAR52938.1
Membrane protein, putative; COG2270 Permeases of the major facilitator superfamily.
       0.761
EAR52941.1
Membrane protein, putative; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.699
EAR52937.1
Membrane protein, putative; COG2270 Permeases of the major facilitator superfamily.
       0.563
EAR50534.1
Hypothetical protein.
  
     0.531
EAR50634.1
Hypothetical protein.
  
     0.527
EAR49868.1
Hypothetical protein.
  
     0.485
EAR50633.1
Hypothetical protein.
  
     0.452
EAR52170.1
COG2825 Outer membrane protein.
  
     0.418
EAR52942.1
peptidyl-tRNA hydrolase domain protein; COG1186 Protein chain release factor B.
       0.406
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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