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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53010.1Translocase. (399 aa)    
Predicted Functional Partners:
EAR53009.1
OmpA domain protein; COG0226 ABC-type phosphate transport system, periplasmic component.
 
     0.859
EAR51603.1
Hypothetical protein.
  
     0.755
EAR50486.1
Membrane protein, putative; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
     0.746
EAR50148.1
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.736
EAR50412.1
Hypothetical protein; COG1372 Intein/homing endonuclease.
  
     0.725
EAR50489.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.700
EAR52484.1
Lipoprotein, putative.
  
     0.687
EAR49468.1
Hypothetical protein.
  
     0.678
EAR49805.1
COG3103 SH3 domain protein.
  
     0.669
EAR52042.1
Hypothetical protein.
  
     0.652
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.