STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53023.1Putative Helicase/Exonuclease; COG3893 Inactivated superfamily I helicase. (977 aa)    
Predicted Functional Partners:
EAR53024.1
ATP-dependent DNA helicase, UvrD/Rep family protein; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily.
  
 0.969
EAR53020.1
Hypothetical protein; COG0802 Predicted ATPase or kinase.
 
  
  0.916
EAR53019.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
 
     0.910
EAR51986.1
COG0514 Superfamily II DNA helicase.
   
  0.908
EAR51987.1
COG0210 Superfamily I DNA and RNA helicases.
   
  0.908
EAR51988.1
COG0210 Superfamily I DNA and RNA helicases.
   
  0.908
EAR53021.1
Hypothetical protein; COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases.
    
  0.897
EAR53022.1
Nucleotidyltransferase family protein; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
      0.861
EAR53025.1
Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family.
       0.741
EAR52192.1
Hypothetical protein.
  
     0.738
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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