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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53077.1Competence protein F; COG1040 Predicted amidophosphoribosyltransferases. (237 aa)    
Predicted Functional Partners:
EAR53008.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
 
    0.962
EAR49628.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.944
EAR51560.1
Two-component sensor histidine kinase; COG2203 FOG: GAF domain.
  
  
 0.916
EAR51734.1
Hypothetical protein.
   
    0.869
EAR50724.1
Hypothetical protein.
   
    0.869
EAR49879.1
COG0287 Prephenate dehydrogenase.
   
  
 0.864
EAR51727.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.859
EAR50739.1
Flagellar basal-body rod protein FlgC; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
   0.859
EAR52362.1
Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.
 
  
 0.852
EAR49436.1
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
    0.824
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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