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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53080.1Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators. (147 aa)    
Predicted Functional Partners:
EAR53079.1
Hydrolase, carbon-nitrogen family protein; COG0388 Predicted amidohydrolase.
      0.944
EAR53078.1
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
     
 0.861
EAR53077.1
Competence protein F; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.800
EAR53081.1
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.773
EAR53076.1
COG0500 SAM-dependent methyltransferases.
       0.683
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.607
EAR52341.1
Hypothetical protein.
  
     0.565
EAR49965.1
Hypothetical protein; COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
  
 
   0.540
EAR50360.1
Hypothetical protein.
  
     0.514
EAR50428.1
Lipoprotein, putative; COG0001 Glutamate-1-semialdehyde aminotransferase.
  
     0.510
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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