STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53089.1Outer membrane efflux protein, putative; COG1538 Outer membrane protein. (486 aa)    
Predicted Functional Partners:
EAR53090.1
COG0845 Membrane-fusion protein.
  
  0.941
EAR53087.1
GAF domain protein; COG0845 Membrane-fusion protein.
  
  0.872
EAR52491.1
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 
 0.854
EAR52925.1
Putative ABC transporter, fused inner membrane subunits; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.852
EAR49909.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
  
 0.851
EAR52244.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.836
EAR49910.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.836
EAR52490.1
COG0845 Membrane-fusion protein.
  
 0.825
EAR49706.1
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
  
 0.825
EAR50362.1
Hypothetical protein.
  
 0.790
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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