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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53148.1COG3534 Alpha-L-arabinofuranosidase. (504 aa)    
Predicted Functional Partners:
EAR53147.1
Hypothetical protein; COG4189 Predicted transcriptional regulator.
 
     0.890
EAR52874.1
COG3533 Uncharacterized protein conserved in bacteria.
 
     0.790
EAR49766.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.764
EAR51060.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
    0.719
EAR50508.1
COG1904 Glucuronate isomerase.
     
 0.692
EAR53149.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.609
EAR49481.1
Putative beta-xylosidase protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.593
EAR51959.1
Rhamnosidase A.
  
     0.500
EAR50488.1
COG1472 Beta-glucosidase-related glycosidases; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.484
EAR49540.1
Putative beta-xylosidase protein; COG3507 Beta-xylosidase.
 
  
 0.467
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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