STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR53163.1Possible Zn-dependent metalloprotease; COG2931 RTX toxins and related Ca2+-binding proteins. (560 aa)    
Predicted Functional Partners:
EAR49707.1
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.751
EAR49446.1
PaxA, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
 
0.737
EAR49706.1
Type I secretion membrane fusion protein, HlyD family protein; COG0845 Membrane-fusion protein.
 
    0.718
EAR51074.1
Hypothetical protein; COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain.
   
   0.632
EAR51075.1
Hypothetical protein.
   
   0.632
EAR52491.1
Probable ATP-binding/permease fusion ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.627
EAR52490.1
COG0845 Membrane-fusion protein.
 
    0.588
EAR52493.1
Hypothetical protein.
   
  0.559
EAR52577.1
Hypothetical protein.
   
   0.540
EAR51079.1
Major tail protein, TP901-1 family protein; COG5437 Predicted secreted protein.
   
   0.534
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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