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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50594.1COG1609 Transcriptional regulators. (340 aa)    
Predicted Functional Partners:
EAR52866.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
    
 
 0.930
EAR51810.1
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
     0.764
EAR51297.1
Putative phosphoenolpyruvate carboxykinase regulator transcription regulator protein; COG1609 Transcriptional regulators.
  
     0.747
EAR49734.1
Ribose operon repressor RbsR; COG1609 Transcriptional regulators.
  
     0.743
EAR51094.1
COG1609 Transcriptional regulators.
  
     0.741
EAR52048.1
Putative transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
     0.734
EAR51117.1
Transcriptional regulator (LacI family protein); COG1609 Transcriptional regulators.
  
     0.732
EAR52128.1
LacI family transcriptional repressor; COG1609 Transcriptional regulators.
  
     0.723
EAR50593.1
Putative periplasmic binding abc transporter signal peptide protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.696
EAR51854.1
Probable DNA-binding, LacI family, regulator; COG1609 Transcriptional regulators.
  
     0.695
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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